Get StartedOrganization & Workspaces

Organizations & Workspaces

Manage organizations, workspaces, team members, and permissions.

Manage research across your team

Manage your team's research workspace with Paperguide's organization model. An organization contains multiple workspaces, each with its own Reference Manager, AI Writer, Systematic Review, Extract Data, and Notebooks. Invite team members, assign roles, and control access at both the organization and workspace level.

What are Organizations & Workspaces?

Paperguide uses an organization and workspace hierarchy so you can separate personal research from collaborative work. The organization is the top-level team container, and each workspace holds the actual research assets and tools your team uses day to day.

An Organization is your team's shared account space. It is created with a seat-based subscription and requires at least 2 active seats. The organization owner manages billing, seats, and team members.

A Workspace is where research work happens. Each workspace has its own Reference Manager, AI Writer, Systematic Review, Extract Data, and Notebooks.

  • Personal — your sovereign library, created automatically when you sign up. It is not part of any organization.
  • Private — your personal space inside an organization. Only you can see it, and even organization admins cannot access it. Paperguide creates it automatically when you join an organization.
  • Team — a shared collaborative space inside an organization. Add multiple team members with different roles, and create as many team workspaces as your team needs.

Personal and Private workspaces serve different purposes. Your Personal workspace exists outside any organization, while your Private workspace exists inside an organization but remains visible only to you.

The org sidebar

When you switch to organization mode, the sidebar changes from the personal layout to the org sidebar. The navigation shifts from a single-user workspace to a multi-workspace team setup.

  • Workspace switcher at the top — switch between your Personal workspace, your Private workspace, and any Team workspaces you belong to
  • Agents group — Research Agent, Literature Review, Deep Research, AI Search, Chat with PDF, and History
  • Workspace group — Reference Manager, AI Writer, Systematic Review, Extract Data, and Notebooks for the currently selected workspace
  • Footer items — Notifications, Chrome Extension, and Account Menu

The selected workspace controls the scope for workspace-based tools. If you switch from one team workspace to another, you also switch the library, documents, reviews, and extracted data tied to that workspace.

Personal vs org mode

Paperguide uses two navigation modes so you can keep individual work separate from team collaboration.

FeaturePersonal ModeOrganization Mode
Sidebar typeDashboardSidebarOrgAppSidebar
Navigation itemsHome, Reference Manager, AI Writer, HistoryWorkspace switcher, Agents group, Workspace group
Workspace scopeSingle personal libraryMultiple workspaces, including Private and Team
Team collaborationNot availableAvailable with roles and permissions
BillingIndividual subscriptionSeat-based organization subscription

Creating an organization

Check eligibility

You need at least 2 active subscription seats to create an organization. Free plans and single-seat subscriptions cannot create organizations.

Create the org

Go to your account settings and create a new organization. Enter a name for the organization, then confirm the setup.

Auto-provisioning

When you create an organization, Paperguide converts your current Personal workspace into your Private workspace inside the organization. Paperguide also creates a shared team workspace named Teamspace automatically.

Your existing content moves with the conversion, so your references, documents, and other workspace content stay intact.

Invite members

Invite team members by email and assign them to the right team workspaces with the right roles. After they accept, Paperguide creates their Private workspace and activates their workspace access.

Workspace management

Team workspaces let you organize research by project, department, lab, client, or review topic. This structure works well when different groups need separate libraries and writing spaces but still belong to the same organization.

Creating team workspaces

Organization owners and admins can create team workspaces inside the organization. Use separate workspaces when you want different member lists, different research libraries, or clearer boundaries between projects.

Renaming team workspaces

Workspace owners can rename team workspaces at any time. Renaming does not affect the content inside the workspace or the memberships assigned to it.

Switching workspaces

Use the workspace switcher at the top of the sidebar to move between your Private workspace and any Team workspaces you can access. The switch takes you into that workspace's own library and collaborative tools.

Deleting team workspaces

Team workspaces can be deleted by the workspace owner or an organization admin. Paperguide does not allow you to delete Personal or Private workspaces independently.

Moving content between workspaces

Folders and documents can move between workspaces, including across different team workspaces. This makes it easier to reorganize research when a project changes hands or when work that started privately needs to move into a shared team space.

Use separate team workspaces when access rules differ across projects. That keeps permissions simpler than managing one large workspace with many exceptions.

Organization roles

Organization roles control who can administer the team account and who can manage workspaces at a broad level.

CapabilityOwnerAdminMember
Manage billing and seats
Create and delete workspaces
Invite and remove members
Access all team workspaces
Access assigned workspaces
Delete organization

Organization owners and admins automatically get owner-level access to all team workspaces in the organization. Regular members only see workspaces they have been explicitly added to.

Workspace roles

Workspace roles control what someone can do inside a specific team workspace. These roles are separate from organization roles.

CapabilityOwnerEditorViewer
View content
Add and edit references
Share folders
Manage workspace members
Rename or delete workspace

Viewers have read-only access. They can open content but cannot create, edit, or delete workspace data.

Team members

Paperguide separates organization membership from workspace membership. That lets you add someone to the organization without giving them access to every shared workspace.

Inviting members

Organization owners and admins invite members by email. During the invitation flow, you can pre-assign the invitee to specific team workspaces with either the Editor or Viewer role.

The invitee receives an email invitation. If they already have an account, Paperguide can also notify them in the app.

What happens when they accept

When the invitee accepts, Paperguide automatically creates their Private workspace inside the organization. Any workspace assignments you selected during the invite are then activated.

This keeps onboarding predictable. New members join the organization with the right starting access instead of needing manual workspace setup after the fact.

Changing roles

Workspace owners can change a member's workspace role at any time. Paperguide does not allow you to demote the last owner of a workspace, so every team workspace always keeps at least one owner.

Removing members

Workspace owners can remove members from a specific workspace. Organization owners and admins can also remove members from the organization entirely, which removes their organization access across the board.

External sharing policy

Organization owners can control how members share resources with people outside the organization. This policy applies at the organization level.

  • Anyone — share with any email address
  • Domain only — share only with email addresses that match the organization owner's domain
  • None — block all external sharing

This setting helps teams balance collaboration with governance. Research groups that work with outside collaborators can stay flexible, while internal-only teams can lock sharing down completely.

Notifications

The notification system keeps you informed about workspace and sharing activity. Check the notification bell in the sidebar footer for updates that need your attention.

Notifications may include:

  • New share invitations
  • Accepted invitations
  • Member changes
  • Workspace activity

You can review notifications from the sidebar, track unread counts, and mark items as read individually or all at once.

Next steps